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Circadian rhythm, chronobiology

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Press Release

2017-10-02

The Nobel Assembly at Karolinska Institutet has today decided to award

the 2017 Nobel Prize in Physiology or Medicine

jointly to

Jeffrey C. Hall, Michael Rosbash and Michael W. Young

for their discoveries of molecular mechanisms controlling the circadian rhythm

https://www.nobelprize.org/nobel_prizes/...press.html

Noble Prize in Chemistry 2017 goes to Method for visualising Biomolecules

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The Nobel Prize in Chemistry 2017 has been awarded to Jacques Dubochet, Joachim Frank and Richard Henderson "for developing cryo-electron microscopy for the high-resolution structure determination of biomolecules in solution".

Prize amount: 9 million Swedish krona, to be shared equally between the Laureates.

Fllowing is the press release information as published on NobelPrize.org

Quote:A picture is a key to understanding. Scientific breakthroughs often build upon the successful visualisation of objects invisible to the human eye.

However, biochemical maps have long been filled with blank spaces because the available technology has had difficulty generating images of much of life’s molecular machinery.

Cryo-electron microscopy changes all of this. Researchers can now freeze biomolecules mid-movement and visualise processes they have never previously seen, which is decisive for both the basic understanding of life’s chemistry and for the development of pharmaceuticals.

Electron microscopes were long believed to only be suitable for imaging dead matter, because the powerful electron beam destroys biological material. But in 1990, Richard Henderson succeeded in using an electron microscope to generate a three-dimensional image of a protein at atomic resolution. This breakthrough proved the technology’s potential.

Joachim Frank made the technology generally applicable. Between 1975 and 1986 he developed an image processing method in which the electron microscope’s fuzzy twodimensional images are analysed and merged to reveal a sharp three-dimensional structure
.

Jacques Dubochet added water to electron microscopy. Liquid water evaporates in the electron microscope’s vacuum, which makes the biomolecules collapse. In the early 1980s, Dubochet succeeded in vitrifying water – he cooled water so rapidly that it solidified in its liquid form around a biological sample, allowing the biomolecules to retain their natural shape even in a vacuum.



Following these discoveries, the electron microscope’s every nut and bolt have been optimised. The desired atomic resolution was reached in 2013, and researchers can now routinely produce three-dimensional structures of biomolecules. In the past few years, scientific literature has been filled with images of everything from proteins that cause antibiotic resistance, to the surface of the Zika virus. Biochemistry is now facing an explosive development and is all set for an exciting future.

Attaching the Scientific Background of the research as well:

I am Abidastudying biotechnology (B.S hons), happy to join the forum

What is cryo-electron microscopy, the Nobel prize-winning technique?

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The 2017 chemistry laureates were recognised for developing cryo-electron microscopy. But what is it, why is it exciting and where will it take us next?

A trio of scientists share this year’s Nobel prize for chemistry: Jacques Dubochet, Joachim Frank and Richard Henderson.

Their win is for work on a technique known as cryo-electron microscopy that has allowed scientists to study biological molecules in unprecedented sharpness, not least the Zika virus and proteins thought to be involved in Alzheimer’s disease.

Being able to capture images of these biological molecules at atomic resolution not only helps scientists to understand their structures, but has opened up the possibility of exploring biological processes by stitching together images taken at different points in time. 

Cryo-electron microscopy has proved valuable in helping scientists to develop drugs.It has been used in visualising the way in which antibodies can work to stop viruses being dangerous, leading to new ideas for medicines as just one example.



Why do we need cryo-electron microscopy?

Microscopes allow scientists to look at structures that cannot be seen with the naked eye – but when these structures are very tiny, it is no longer possible to use rays of light to do the job because their wavelengths are not short enough. Instead, beams of electrons can be used – with a technique known as transmission electron microscopy (TEM) – or scientists can employ a method known as x-ray crystallography in which x-rays are scattered as they pass through samples, creating patterns that can be analysed to reveal the structure of molecules.

The trouble is, x-ray crystallography relies on biological molecules forming ordered structures, which many fail to do, and the technique does not allow researchers to probe how molecules move.

Historically, TEM also presented difficulties. The beam itself fried the biological molecules being studied, while the technique involved the use of a vacuum which resulted in biological molecules drying out and collapsing, throwing a spanner in the works when it came to probing their structure.

This year’s chemistry laureates tackled these conundrums, enabling scientists to use TEM to image biological molecules in incredible resolution.

What did they do?
Henderson and his team, using a glucose solution to prevent molecules drying out, combined a weaker beam of electrons with images taken from many angles and mathematical approaches to build up a 3D image of a protein neatly organised within a biological membrane. It was a breakthrough moment. Henderson later succeeded in unveiling its 3D structure at atomic resolution – a first for a protein.

Meanwhile Frank developed ingenious image processing techniques to unpick TEM data and build up images of biological molecules as they are in solution, where they point in many different directions.

Dubochet came up with a sophisticated approach to prevent molecules from drying out. Henderson’s technique did not work for water-soluble biological molecules, while freezing samples resulted in the formation of ice crystals which caused damage and made the resulting images challenging to interpret.

Dubochet’s solution was to rapidly cool samples at such speed that the water molecules did not have time to adopt a regular structure. Rather, they were left pointing every which way, resulting in a glass within which biological molecules were frozen in time – in their natural shape.

What’s next?

The trio’s work, and subsequent efforts to perfect these approaches, has already led to astonishing developments.The technique of cryo-TEM has really opened up the molecular world of the cell to direct observation.

Among the processes it has made clearer is the mechanism by which DNA is copied into the single-stranded molecule RNA. 

But the future is also exciting, with scientists using the technique to probe the structure of drug targets, as well as components within cells involved in sensing pain, temperature and pressure. Further improvements in resolution are also afoot.

Cryo-electron microscopy is one of those techniques so basic and important that its use spans all of biology – including understanding the human body and human disease and in designing new medicines.

Nobel prizes 2017: Everything you need to know about circadian rhythms

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The Nobel prize for medicine or physiology was awarded for research on the body’s clock, which is at work in all multicellular life. But what exactly is it?


In the age of international travel , shift work and personal gadgets that stave off sleep, the award of the Nobel prize for research on the body’s clock, or circadian rhythms, could hardly be more timely.

First identified in fruit flies, the tiny molecular components of the clock are at work in all multicellular life, humans included. The internal clock is now regarded as a key feature of life on Earth, one that wired the rotation of the planet into the fabric of our cells over millions of years of evolution.

The beauty of the body’s clock is that it allows an organism to anticipate the rising and setting of the sun, rather than simply reacting to it. There is no single body clock that bangs out the hour. Instead, molecular timepieces are dotted through the different cell types, like watches in a jeweller’s, where they control great swaths of physiology from sleep patterns and body temperature to blood pressure, metabolism and the release of hormones.

Scientists knew that living organisms had internal clocks centuries before they understood what made them tick. It is hard to find a plant, bug, or animal, that does not change its behaviour in some way as day gives way to night, and night becomes day. The grandly-named French astronomer Jean-Jacques d’Ortous de Mairan performed some of the most convincing early experiments that pointed to the existence of an internal clock. In 1729, he showed that mimosa plants opened their leaves in the daytime and closed them again at night, even if they were kept in total darkness. The observation suggested the plants weren’t so much reacting to light, but somehow in tune with the day-night cycle.

Two hundred years after the death of d’Ortous de Mairan, modern scientists took their first major step towards understanding internal clocks. In 1971, the US neuroscientist Seymour Benzer and his student Ronald Konopka noticed that a batch of mutant fruit flies seemed to have faulty internal clocks. The dodgy timekeeping was traced back to mutations in a gene that was later given the name “period”.

Enter the Nobel prize winners. In 1984, Jeffrey Hall and Michael Rosbash at Brandeis University in Waltham, Massachusetts, studied the period gene and the protein the body makes from it. They showed that the protein, named PER, built up in cells overnight before being broken down in the daytime. It meant that levels of PER rose and fell over the 24-hour daily cycle.

It was far from clear what made PER go up and down like clockwork. The two scientists proposed that it was the build-up of the PER protein itself that stopped cells making more, just as wolfing down too many doughnuts dampens the desire to eat them.
In 1994, Michael Young at Rockefeller University showed that this kind of feedback loop was indeed at work. He discovered a second body clock gene that is used to make a protein called TIM. When TIM proteins come across PER proteins in cells, the two stick together, move into the nucleus, and shut the period gene down. In the late 1990s, other scientists helped piece together more genes in the clock’s mechanism, including those that help cells set the time by the light the body receives.

The body clock is more than a biological curiosity. Studies by health researchers have found evidence that disrupting circadian rhythms by doing shift work can raise the risk of cancer . It is not well understood why shift work has such health risks, but one hypothesis is that exposure to light at night suppresses levels of melatonin, a hormone that might mop up particles known as “reactive oxygen species” which cause damage to cells. In 2014, scientists found shift work and jet lag disrupt the rhythms of hundreds of genes that are normally drawn on to maintain, repair and protect the body.

Research on the body clock has helped scientists improve health. Many drugs now on the market work best when taken at the right time. The cholesterol-cutting drug Mevacor, for example, is taken at night because levels of the enzyme it targets are highest then. The same is true for low-dose aspirin used to reduce blood pressure.

Your Lab Needs Funding, but How Do You Manage the Costs?

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Hey Guys,

Just wanted to share a cool resource for you all. 
Biotech is both a high-growth and high-risk industry. In this field, success strongly relies on the science behind every concept that a company strives to make a reality. One of the main challenges in biotech is that the outcome of any long-term R&D project heavily depends on time-sensitive experiments that can sometimes cost a little fortune each.

Both public and private funding is usually limited, at least in comparison with the extremely high costs associated with R&D. 
We have published a white paper on how to effectively manage the costs in your lab - “The Essential Guide to Managing Biotech Labs”. Download it for free here: http://ow.ly/fnQE30fFNfZ

Your Lab Needs Funding, but How Do You Manage the Costs?

$
0
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Hey Guys,

Just wanted to share a cool resource for you all. 
Biotech is both a high-growth and high-risk industry. In this field, success strongly relies on the science behind every concept that a company strives to make a reality. One of the main challenges in biotech is that the outcome of any long-term R&D project heavily depends on time-sensitive experiments that can sometimes cost a little fortune each.

Both public and private funding is usually limited, at least in comparison with the extremely high costs associated with R&D. 
We have published a white paper on how to effectively manage the costs in your lab - “The Essential Guide to Managing Biotech Labs”. Download it for free here: http://ow.ly/fnQE30fFNfZ

Job opportunity in Bangalore , India

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Urgent Requirement

Designation : Bioinformatics Analyst

Qualification : Bachelor's/Master's Degree in Bioinformatics with 1-2 years experience.

Freshers in Bioinformatics with good academic record can also apply.(2016-17).

Need candidates who have done project or internship in NGS ( New Generation Sequencing )

Intersted candidates can drop their CVs to chandrakala.b@2coms.com

Or contact : 9703934675 / 040 - 33540809

Job opportunities at Biocon , Bangalore , India

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BIOCON

Walk - In at Ahemadabad on Sunday, 8th October 2017 ( 9 AM - 2 PM) for positions in Fill Finish and Insulin Production

Check this attachment for further details :

Internship for 2nd year,bsc(hons)biochemistry

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Is their any options for internship in research projects...???

Job Opportunity at Syngene International LTD. Bangalore India

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Recruitment Drive by Syngene for Analytical - NPD on 8th October 2017 , Sunday at Hyedrabad

Refer the attachment for details :

Regarding internship

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Sir, can you please suggest me some recent experiment or topics related to genetics and chemical science for my internship???

Regarding internship

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HIV GENOTYPING and role of mutation in drug resistance are different??

Leaky potassium channel

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Explain leaky potassium channel.

Vikash

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im vikash...
hope i would learn something new and intresting.here....,?

MBA in biotechnology

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Can u plz tell me abt entrance exams held for MBA biotech.. n it's scop..

Regarding internship

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Sir, i want to know about the internship projects. As i m pursuing B. S. C (H) biotechnology. So, i want to know tht where i can get the good interships.

Genetically boosting the nutritional value of corn could benefit millions

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Scientists discover way to reduce animal feed and food production costs by increasing a key nutrient in corn

Source:Rutgers University

Summary:Scientists have found an efficient way to enhance the nutritional value of corn -- the world's largest commodity crop -- by inserting a bacterial gene that causes it to produce a key nutrient called methionine, according to a new study.




Rutgers scientists have found an efficient way to enhance the nutritional value of corn -- the world's largest commodity crop -- by inserting a bacterial gene that causes it to produce a key nutrient called methionine, according to a new study.

The Rutgers University-New Brunswick discovery could benefit millions of people in developing countries, such as in South America and Africa, who depend on corn as a staple. It could also significantly reduce worldwide animal feed costs.

"We improved the nutritional value of corn, the largest commodity crop grown on Earth," said Thomas Leustek, study co-author and professor in the Department of Plant Biology in the School of Environmental and Biological Sciences. "Most corn is used for animal feed, but it lacks methionine -- a key amino acid -- and we found an effective way to add it."

The study, led by Jose Planta, a doctoral student at the Waksman Institute of Microbiology, was published online today in the Proceedings of the National Academy of Sciences.

Methionine, found in meat, is one of the nine essential amino acids that humans get from food, according to the National Center for Biotechnology Information. It is needed for growth and tissue repair, improves the tone and flexibility of skin and hair, and strengthens nails. The sulfur in methionine protects cells from pollutants, slows cell aging and is essential for absorbing selenium and zinc.

Every year, synthetic methionine worth several billion dollars is added to field corn seed, which lacks the substance in nature, said study senior author Joachim Messing, a professor who directs the Waksman Institute of Microbiology. The other co-author is Xiaoli Xiang of the Rutgers Department of Plant Biology and Sichuan Academy of Agricultural Sciences in China.

"It is a costly, energy-consuming process," said Messing, whose lab collaborated with Leustek's lab for this study. "Methionine is added because animals won't grow without it. In many developing countries where corn is a staple, methionine is also important for people, especially children. It's vital nutrition, like a vitamin."

Chicken feed is usually prepared as a corn-soybean mixture, and methionine is the sole essential sulfur-containing amino acid that's missing, the study says.

The Rutgers scientists inserted an E. coli bacterial gene into the corn plant's genome and grew several generations of corn. The E. coli enzyme -- 3?-phosphoadenosine-5?-phosphosulfate reductase (EcPAPR) -- spurred methionine production in just the plant's leaves instead of the entire plant to avoid the accumulation of toxic byproducts, Leustek said. As a result, methionine in corn kernels increased by 57 percent, the study says.

Then the scientists conducted a chicken feeding trial at Rutgers and showed that the genetically engineered corn was nutritious for them, Messing said.

Surprise, one important outcome was that corn plant growth was not affected

In the developed world, including the U.S., meat proteins generally have lots of methionine, Leustek said. But in the developing world, subsistence farmers grow corn for their family's consumption.

study shows that they wouldn't have to purchase methionine supplements or expensive foods that have higher methionine

Journal Reference:

Jose Planta, Xiaoli Xiang, Thomas Leustek, Joachim Messing. Engineering sulfur storage in maize seed proteins without apparent yield loss. Proceedings of the National Academy of Sciences, 2017; 201714805 DOI: 10.1073/pnas.1714805114

Job opportunity in Strand Life sciences, Bangalore

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Strand hiring Bioinformatics Scientists.
Send in your resumes to strand @biohiring.com with Job Title as subject.
Check out the attachment for further information :

BITP INTERVIEW

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Hi everyone,

Can anybody please give an outline of BITP final interview and commonly asking questions for the same
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