Quantcast
Channel: Biotechnology Forums - All Forums
Viewing all 2695 articles
Browse latest View live

Sex distortion of mosquitoes in control of malaria spread

$
0
0
A ‘sex-distorting’ approach to control malaria-spreading mosquitoes, first proposed in theory sixty years ago, my be closer to reality. A new study in the journal Nature Communications from an international team led by researchers in Imperial College London, describes use of an endonuclease from slime mould to selectively shred the X chromosome of the malaria mosquito vector Anopheles gambiae. This has a two-fold effect as it results in males having almost exclusively male offspring, leading to reductions in population over time and also reduces malaria spread as only female mosquitoes bite humans and transmit malaria.

Malaria remains a serious public health issue, most notably in sub-Saharan Africa. The disease kills hundreds of thousands of people every year. In mosquitoes, like humans, normal sperm contains 50% X and 50% Y chromosomes. The current study exploited the fact that the endonuclease I-Ppol selectively targets cutting sites located exclusively on the X chromosome of Anopheles gambiae. The research team used a combination of protein engineering and molecular genetics to produce male mosquitoes in which the I-Ppol was turned on only during spermatogenesis. Therefore, these males produced almost no X chromosome-containing sperm as the X chromosomes were shredded by the endonuclease, and hence very few female offspring. Importantly, the modification was heritable so that many of the male offspring of the original males also produced few female offspring.

The results were striking. In five test cages originally containing 50 males and 50 females each, introduction of 150 sex-distorter males resulted in a major reduction in females over 4 generations and in complete loss of the population after another 2 generations in 4 out of 5 cages. The results are promising and are unlikely to have a serious impact on the surrounding ecosystem as, for example, it specifically targets the malarial mosquito unlike pesticides which are more indiscriminate. However, the system is some years away from deployment in the field.

Commentators have welcomed the study but point out that targeting the Y chromosome would represent a better long-term strategy as the modified males would pass the change on to all of their male offspring and there would be less dilution of the effect than would be likely with the system in the current study, which would probably need ‘topping up’ over time. The authors of the current paper agree with this analysis and in fact have been working on gene insertions in the mosquito Y chromosome. Thus the future looks promising for harnessing of sex-distorting strategies to control spread of malaria.

Sources

Galizi, R., Doyle, L. A., Menichelli, M., Bernardini, F., Deredec, A., Burt, A., Stoddard, B. L., Windbichler, N., and Crisanti, A. (2014). A synthetic sex ratio distortion system for the control of the human malaria mosquito. Nature Communications, Vol. 5 (10 June 2014), doi:10.1038/ncomms4977

BBC News; available from http://www.bbc.com/news/science-environment-27765974 [Accessed 13 June 2014]

isolation of enzyme dna fragment

$
0
0
how i can isolate a required enzyme gene from a bacterial source?

ray ban sunglasses crpn

$
0
0
Carter,cheap nike air max, one cheap nike air max after another green ball of light emerges from the trees. Broken ray ban sunglasses ball of light inside the villain is exposed, shocking family forest fairy ! Fortunately, a little distance away, the other also allows the film to dry behind the wing to fly, half will catch, howeve nike air max 1 r. Jus

turn to help

SAS Clinical Training | SAS Programmer Course

$
0
0
Training type: Online
Duration: 4-5 Weeks
Batch Timings: Morning, Evening and Weekend batches available
Who should attend?
Bioinformatics or Life Science Graduates
Job aspirants with basic understanding of clinical programming concepts or statistics
Clinical SAS Programming is used for Clinical Data Integration, Organizing, Standardizing and Managing clinical research data and metadata. It provides the foundation you need to ensure standard, trusted clinical data to support strategic analyses, such as cross-study and advanced safety analysis. With SAS Clinical Programming, you can gain both speed and efficiency by automating repeatable clinical data integration tasks.
Class size is limited—sign up for this course today!
Course Highlights
(Below outlines are only a small part of the full curriculum)
BASE SAS and Advance SAS:
Basic SAS Concepts
Referencing files, setting Options, Editing and debugging SAS Programs
Creating List Reports and Enhanced List and summary reports
Creating SAS data sets from raw data
Understanding DATA step processing
Creating and applying user defined formats
Producing descriptive Statistics
Creating and managing variables
Reading SAS Data sets
Combining SAS data sets
Transferring Data with SAS functions
Generating Data with DO loops and processing variables with Array
Reading Raw Data in fixed fields
Advanced Base/SAS: Macros and Proc Sql
Advanced Base/SAS: Certification Steps

SAS Clinical Programming
Explanation of organizational aspects of the Biometrics department
Basic concepts of Clinical trials
Phase – I, Phase – II, Phase – III, Phase – IV
Data Management & Statistical Methods in Clinical Trails
Access DICTIONARY Tables using the SQL procedure
Explanation of the Clinical trial process
Protocol development
CRF Design and development, Data Management plan
Principles of 21 CFR Part 11, International Conference on Harmonization, Good Clinical Practices
Edit check specifications document, Edit check programming
Data querying, Paper CRF and E-CRF studies
Database programming and basic understanding of EDC studies
Annotated CRF’s
Data Querying
Lab data handling – procedures and pitfalls
Patient Profiles, Database Lock
MedDRA®: Overview
CDISC (ODM, SDTM, ADaM and Define.XML), SDTM 3.1.2 and ADAM 1.2 Implementation
Clinical SAS Certification Steps
Resume Formatting
Mock Interviews by SAS Clinical Programmers
Job Placement Marketing
For full curriculum and details contact training@serigor.com or call us at +1-443-687-9600

Buy only original high-quality real and fake passports, driver's license

$
0
0
Buy Passports,Driver's License,ID Cards,Resident Permits

We are the best producers of quality documents,With over 12million of
our documents circulating over the world.
We offer only original high-quality real and fake passports, driver's
licenses, ID cards, stamps and other products for a number of
countries like: USA, Australia, Belgium, Brazil, Canada, Italia,
Finland, France, Germany, Israel, Mexico, Netherlands, South Africa,
Spain, United Kingdom. This list is not full.

To get the additional information and place your order, just visit our
website or you contact us via email or mobile.


Contact e-mail: angellottiferres41@outlook.com

General support: angellottiferres41@outlook.com



Tel : 00237-97827405

feel free to contact via email or call at anytime.
-----------------------------
Keywords:

buy fake USA(United States) passports,
buy fake Australian passports,
buy fake Belgium passports,
buy fake Brazilian(Brazil) passports,
buy fake Canadian(Canada) passports,
buy fake Finnish(Finland) passports,
buy fake French(France) passports,
buy fake German(Germany) passports,
buy fake Dutch(Netherland/Holland) passports,
buy fake Israel passports,
buy fake UK(United Kingdom) passports,
buy fake Spanish(Spain) passports,
buy fake Mexican(Mexico) passports,
buy fake South African passports.
buy fake Australian driver licenses,
buy fake Canadian driver licenses,
buy fake French(France) driver licenses,
buy fake Dutch(Netherland/Holland) driving licenses,
buy fake German(Germany) driving licenses,
buy fake UK(United Kingdom) driving licenses,
buy fake Diplomatic passports,
buy false USA(United States) passports,
buy false Australian passports,
buy false Belgium passports,
buy false Brazilian(Brazil) passports,
buy false Canadian(Canada) passports,
buy false Finnish(Finland) passports,
buy false French(France) passports,
buy false German(Germany) passports,
buy false Dutch(Netherland/Holland) passports,
buy false Israel passports,
buy false UK(United Kingdom) passports,
buy false Spanish(Spain) passports,
buy false Mexican(Mexico) passports,
buy false South African passports.
buy false Australian driver licenses,
buy false Canadian driver licenses,
buy false French(France) driver licenses,
buy false Dutch(Netherland/Holland) driving licenses,
buy false German(Germany) driving licenses,
buy false UK(United Kingdom) driving licenses,
buy false Diplomatic passports,
buy Camouflage passports,
buy passport Duplicates,
fake USA(united States) passports for sale,
fake Australian passports for sale,
fake Belgium passports for sale,
fake Brazilian(Brazil) passports for sale,

============================================
buy, get, fake, false, passport, passport, id, card, cards, uk, sell,
online, canadian, british novelty, counterfeit, bogus, american
italian, malaysian, australian, documents, identity, identification,
driver's license, residence, permit, SSN fake passport id, free fake
passport, identity theft, fake, novelty, camouflage, passport,
anonymous, private, safe, travel, anti terrorism, international,
offshore, banking, id, driver, drivers, license, instant, online, for
sale, cheap, wholesale, new identity, second, citizenship, identity,
identification, documents, diplomatic, nationality, how to, where to,
get, obtain, buy, purchase, make, build, a, passport, i.d., british,
honduras, uk, usa, us, u.s., canada, canadian, foreign, visa, swiss,
card, ids, document, getting, visas, cards, foreign .

We offer only original high-quality real and fake passports, driver's licenses, ID c

$
0
0
Buy Passports,Driver's License,ID Cards,Resident Permits

We are the best producers of quality documents,With over 12million of
our documents circulating over the world.
We offer only original high-quality real and fake passports, driver's
licenses, ID cards, stamps and other products for a number of
countries like: USA, Australia, Belgium, Brazil, Canada, Italia,
Finland, France, Germany, Israel, Mexico, Netherlands, South Africa,
Spain, United Kingdom. This list is not full.

To get the additional information and place your order, just visit our
website or you contact us via email or mobile.


Contact e-mail: angellottiferres41@outlook.com

General support: angellottiferres41@outlook.com



Tel : 00237-97827405

feel free to contact via email or call at anytime.
-----------------------------
Keywords:

buy fake USA(United States) passports,
buy fake Australian passports,
buy fake Belgium passports,
buy fake Brazilian(Brazil) passports,
buy fake Canadian(Canada) passports,
buy fake Finnish(Finland) passports,
buy fake French(France) passports,
buy fake German(Germany) passports,
buy fake Dutch(Netherland/Holland) passports,
buy fake Israel passports,
buy fake UK(United Kingdom) passports,
buy fake Spanish(Spain) passports,
buy fake Mexican(Mexico) passports,
buy fake South African passports.
buy fake Australian driver licenses,
buy fake Canadian driver licenses,
buy fake French(France) driver licenses,
buy fake Dutch(Netherland/Holland) driving licenses,
buy fake German(Germany) driving licenses,
buy fake UK(United Kingdom) driving licenses,
buy fake Diplomatic passports,
buy false USA(United States) passports,
buy false Australian passports,
buy false Belgium passports,
buy false Brazilian(Brazil) passports,
buy false Canadian(Canada) passports,
buy false Finnish(Finland) passports,
buy false French(France) passports,
buy false German(Germany) passports,
buy false Dutch(Netherland/Holland) passports,
buy false Israel passports,
buy false UK(United Kingdom) passports,
buy false Spanish(Spain) passports,
buy false Mexican(Mexico) passports,
buy false South African passports.
buy false Australian driver licenses,
buy false Canadian driver licenses,
buy false French(France) driver licenses,
buy false Dutch(Netherland/Holland) driving licenses,
buy false German(Germany) driving licenses,
buy false UK(United Kingdom) driving licenses,
buy false Diplomatic passports,
buy Camouflage passports,
buy passport Duplicates,
fake USA(united States) passports for sale,
fake Australian passports for sale,
fake Belgium passports for sale,
fake Brazilian(Brazil) passports for sale,

============================================
buy, get, fake, false, passport, passport, id, card, cards, uk, sell,
online, canadian, british novelty, counterfeit, bogus, american
italian, malaysian, australian, documents, identity, identification,
driver's license, residence, permit, SSN fake passport id, free fake
passport, identity theft, fake, novelty, camouflage, passport,
anonymous, private, safe, travel, anti terrorism, international,
offshore, banking, id, driver, drivers, license, instant, online, for
sale, cheap, wholesale, new identity, second, citizenship, identity,
identification, documents, diplomatic, nationality, how to, where to,
get, obtain, buy, purchase, make, build, a, passport, i.d., british,
honduras, uk, usa, us, u.s., canada, canadian, foreign, visa, swiss,
card, ids, document, getting, visas, cards, foreign .

Buy only original high-quality real and fake passports, driver's license

$
0
0
Buy Passports,Driver's License,ID Cards,Resident Permits

We are the best producers of quality documents,With over 12million of
our documents circulating over the world.
We offer only original high-quality real and fake passports, driver's
licenses, ID cards, stamps and other products for a number of
countries like: USA, Australia, Belgium, Brazil, Canada, Italia,
Finland, France, Germany, Israel, Mexico, Netherlands, South Africa,
Spain, United Kingdom. This list is not full.

To get the additional information and place your order, just visit our
website or you contact us via email or mobile.


Contact e-mail: angellottiferres41@outlook.com

General support: angellottiferres41@outlook.com



Tel : 00237-97827405

feel free to contact via email or call at anytime.
-----------------------------
Keywords:

buy fake USA(United States) passports,
buy fake Australian passports,
buy fake Belgium passports,
buy fake Brazilian(Brazil) passports,
buy fake Canadian(Canada) passports,
buy fake Finnish(Finland) passports,
buy fake French(France) passports,
buy fake German(Germany) passports,
buy fake Dutch(Netherland/Holland) passports,
buy fake Israel passports,
buy fake UK(United Kingdom) passports,
buy fake Spanish(Spain) passports,
buy fake Mexican(Mexico) passports,
buy fake South African passports.
buy fake Australian driver licenses,
buy fake Canadian driver licenses,
buy fake French(France) driver licenses,
buy fake Dutch(Netherland/Holland) driving licenses,
buy fake German(Germany) driving licenses,
buy fake UK(United Kingdom) driving licenses,
buy fake Diplomatic passports,
buy false USA(United States) passports,
buy false Australian passports,
buy false Belgium passports,
buy false Brazilian(Brazil) passports,
buy false Canadian(Canada) passports,
buy false Finnish(Finland) passports,
buy false French(France) passports,
buy false German(Germany) passports,
buy false Dutch(Netherland/Holland) passports,
buy false Israel passports,
buy false UK(United Kingdom) passports,
buy false Spanish(Spain) passports,
buy false Mexican(Mexico) passports,
buy false South African passports.
buy false Australian driver licenses,
buy false Canadian driver licenses,
buy false French(France) driver licenses,
buy false Dutch(Netherland/Holland) driving licenses,
buy false German(Germany) driving licenses,
buy false UK(United Kingdom) driving licenses,
buy false Diplomatic passports,
buy Camouflage passports,
buy passport Duplicates,
fake USA(united States) passports for sale,
fake Australian passports for sale,
fake Belgium passports for sale,
fake Brazilian(Brazil) passports for sale,

============================================
buy, get, fake, false, passport, passport, id, card, cards, uk, sell,
online, canadian, british novelty, counterfeit, bogus, american
italian, malaysian, australian, documents, identity, identification,
driver's license, residence, permit, SSN fake passport id, free fake
passport, identity theft, fake, novelty, camouflage, passport,
anonymous, private, safe, travel, anti terrorism, international,
offshore, banking, id, driver, drivers, license, instant, online, for
sale, cheap, wholesale, new identity, second, citizenship, identity,
identification, documents, diplomatic, nationality, how to, where to,
get, obtain, buy, purchase, make, build, a, passport, i.d., british,
honduras, uk, usa, us, u.s., canada, canadian, foreign, visa, swiss,
card, ids, document, getting, visas, cards, foreign .

Genome mapping

$
0
0
Hello
I have questions related to Genome mapping.
1.what is genome mapping
2.what is genome mapping used for?
3.what are the techniques used
4.case study related to genome mapping

Thank you

louis vuitton bags qfkau

$
0
0
That fool, could there want with jimmy choo uk jimmy choo sh jimmy choo uk oes up born ? Zhu Gang column stunned moment, jimmy choo for a long while to shake the hand badly. Mullite, mullite, depends I Yurenbushu, ill-fated ah, alas ! This fool shook his head a helpless expression. When a start, Lang is also not in the moo louis vuitton bags d

enzymes in ecoli

$
0
0
what are the enzymes that can be produced by ecoli ?

i mean genes present in ecoli genome which produces enzymes or enzyme producing genes present in ecoli DH5 alpha strain?

list of micro-organism possesing glyoxalte cycle pathway

$
0
0
i know that glyoxalate cycle is a shunt pathway of krebs cycle..and important enzymes malate synthase and isocitrate dehydrogase which play vital role in the glyoxalate pathway.

can any one help me in knowing micro organisms which has this two enzymes?

Affymatrix Microarray data

$
0
0
I have affymatrix microarray data , can someone please tell me whcih company in Germany provides this kind of services for analyzing my data.
Thanks a lot n advance

CommandSets: Shell Scripting for Bioinformatics

$
0
0
Hello all,

Shell scripting has been an indispensable part of Bioinformatics. Thought to initiate a thread for discussing problems/codes/useful one-liners/anything that can ease the life of the Bioinformaticians!

Here are some of the useful one-liners one can use for various purposes ( assuming actions on tab separated text file):

Transpose of a File :
awk '{ for (i=1; i<=NF; i++) { a[NR,i] = $i }}NF>p { p = NF }END { for(j=1; j<=p; j++) {str=a[1,j];for(i=2; i<=NR; i++){str=str" "a[i,j];}print str}}' <filename>

Number of Columns and Rows in a matrix
awk '{print NF}' <filename> (For Columns)
awk '{print NR}' <filename> (For Rows)


Print Even and Odd Numbered Columns and Rows in a matrix
awk '{NR%2==0}' <filename> For Even Rows
awk '{NR%2==1}' <filename> For odd Rows
awk '{NF%2==0}' <filename> For Even Columns
awk '{NF%2==1}' <filename> For Odd Columns


Fastq to Fasta conversion
Use FASTX Toolkit from Hannon Lab: Click Here for the link.

The Magic of !!
Double exclamation is a very useful command in Shell (those who have used it, would agree). Whenever you type !! in your terminal, it will print the Last Shell Command you used on your Linux Terminal. Now this puts forward an array of possibiliies using !!.

Just for an example:
Use !! to add your last used command into any file or even a shell script you want to update.
If I use:
perl abc.pl
and then
!! (it will print following)
perl abc.pl

So, you can do echo !! >> filename (this will append the last used command to your file.

Delete First Line of a File
All you have to do is:
sed '1d' Filename

Delete all lines having a particular string
sed '/STRING/d' Filename

So, these were some of the tips for today. I'll keep it posted. And, let's share tips and problems here.

Need help in choosing right subject in Ph.D. biotech

$
0
0
Hi everyone,
Hope all are doing good.....

Guys, I completed my masters in biotechnology in 2011 from India. Now, I want to pursue my further career in biotech mixed with any computer related subjects (like Bioengineering). So can anyone please suggest me are there any courses in masters and also universities which are offering subjects as I asked before.

Also please suggest me that "Is it better to opt now for masters in the previously mentioned subjects (biotech mixed up with computers) or Ph.D. (purely biotechnology), so that I want to earn a good job in biotech field itself.

Hoping for the quick and best answer...

Thank You for reading my query...

Have a nice time guys.

Criminal profiling to identify microbial serial killers

$
0
0
A new mathematical and computational method combining elements of criminal geographical profiling and Bayesian methods used in epidemiology has been developed by researchers in Queen Mary University of London and Texas State University in the USA to determine infection sources by geographical location of disease cases. The method, described in a paper in the journal Methods in Ecology and Evolution, had improved search efficiency compared to either of the other two methods in both simulations and real world situations.

In criminology, investigators use a method called geographical profiling in which they use information on the spatial locations of linked crimes such as murder or rape in order to determine the area where the perpetrator is most likely to live. This provides a way to narrow down the search, for example in cases which generate large numbers of names of potential suspects such as that of the Yorkshire Ripper. This method uses an algorithm called criminal geographic targeting (CGT). In recent times this method has been applied to identification of infection sources for diseases by using information on the locations of disease cases. This facilitates targeted intervention, for example in the case of malaria outbreaks. However, issues arise when trying to identify multiple sources, particularly when the number of sources is not known.

In the current study, the researchers claim to have solved the issue of identifying multiple sources, even when the number of sources is unknown. They tested their new model on both simulations and on real world situations such as data from a malaria outbreak in Cairo. Study author Dr Steve le Comber explained the effectiveness of the new model in identifying the breeding sites of the mosquitoes responsible for this outbreak: malaria. "The experts working in the field had to search almost 300 square km to find seven breeding sites, but our model found the same sites after searching just two thirds of this area…In fact our model found five of the seven sites after searching just 10.7 square km. This is potentially important since there is a lot of evidence suggesting that the best way to control outbreaks of malaria is to attack the mosquito breeding sites – but it is incredibly difficult to do in practice."

Another key advantage of the technique is that it takes only minutes to carry out on a computer, suggesting its potential in the important early stages of epidemics when control efforts are most likely to bear fruit. Thus an outbreak could be stopped in its tracks before it has the opportunity to spread. Dr le Comber concludes: "The model has potential to identify the source of other infectious diseases as well, and we're now working with public health bodies to develop it further for use with TB, cholera and Legionnaires' disease."

Sources


Verity, R., Stevenson, M. D., Rossmo, D. K., Nichols, R. A., and Le Comber, S. C. (2014). Spatial targeting of infectious disease control: identifying multiple, unknown sources. Methods Ecol Evol (1 April 2014), pp. n/a-n/a, doi:10.1111/2041-210x.12190

Press release: Queen Mary, University of London; available from http://www.eurekalert.org/pub_releases/2...061914.php [Accessed 22 June 2014]

Mixing of genes of human and canine influenza virus: pandemic potential

$
0
0
A new study has shown that newer equine influenza A viruses from strains generated in the early 2000s can infect isolated dog tracheas and that reassorted viruses combining gene fragments from human influenza A virus (hIAV) and canine influenza virus (CIV) are viable. The study from researchers in the USA and UK, published online ahead of print in the Journal of Virology, suggests that dogs could act as a ‘mixing vessel’ for novel viruses with the potential to cause pandemics.

CIV is a relatively recent disease which was first observed in 2003 when a single equine influenza virus was transferred to dogs in a greyhound training facility in the USA and then was spread by the infected greyhounds to other states. Other similar transfers occurred from horses to foxhounds in the UK and from infected horses to nearby dogs in Australia in 2007. Influenza A viruses generally have the ability to be transferred between species, as for example with the H1N1pdm09 ‘swine flu’ pandemic of 2009 in which a virus originating in pigs became combined with human and avian gene segments. It became just antigenically different enough to evade immune recognition by human antibodies against previous H1N1 seasonal strains.

The current study used a model of infection of dog tracheas with different equine and human influenza A viruses in order to study efficiency of cross-species infection with different viral strains. The research team found that equine viruses from the early 2000s infected dog tracheas efficiently to give a CIV-like phenotype in terms of infectivity and tissue damage while those from the 1960s were not effective. Some human influenza virus A strains were also effective. Furthermore, engineered influenza viruses carrying gene segments from human and canine strains were effective as was a virus engineered by combining the human 2009 pandemic virus with the haemagglutinin (HA) and neuraminidase (NA) genes of CIV. It is the HA and NA genes that are often targeted by antibodies and vaccines. The authors point out that a virus combining CIV HA with seven genomic segments of the human H1N1 has been recently detected in dogs and would be poorly- if at all- recognised by human antibodies to seasonal H1N2 strains.

Corresponding author Dr Pablo Murcia and of the University of Glasgow explains the significance of the results with engineered chimeric canine-human influenza viruses: “We showed that the genes are indeed compatible, and we also showed that chimeric viruses carrying human and canine influenza genes can infect the dog tracheas." He explains that this implies such chimera could occur in nature and infect dogs, which could then act as “mixing vessels” for viruses with pandemic potential. The final edition of the article is due to appear in the August 2014 edition of the Journal of Virology. Given the high exposure of humans to dogs, the research team are currently investigating the burning question of whether these chimeric viruses can infect human lungs.

Sources

Gonzalez, G. et al., 2014. Infection and pathogenesis of canine, equine and human influenza viruses in canine tracheas. Journal of Virology, Published ahead of print, 4 June 2014, doi: 10.1128/JVI.00887-14

Press release: American Society for Microbiology, available from http://www.eurekalert.org/pub_releases/2...061914.php

World First Stem Cell Clinical Trials in Japan

$
0
0
At CiRA, the Japan institute of Nobel Prize winning stem cell scientist Shinya Yamanaka, a number of world first "induced pluripotential stem cell" clinical trials are brewing, including one that launches in August. In the meantime, even more fraud is exposed at its sister Japan institute, the Riken institute, where a handful of researchers whipped up the hugely controversial Nature "acid bath" stem cell paper.

http://www.biosciencetechnology.com/arti...-struggles

Gene shuffling deals dangerous genetic outcome in childhood brain tumour

$
0
0
A search for large-scale DNA rearrangements has revealed a surprising genetic phenomenon associated with the deadly paediatric brain tumour, Group 3 medulloblastoma. The study from a research team in the European Molecular Biology Laboratory (EMBL), the German Cancer Research Centre (DKFZ), both in Heidelberg, Germany, and Sanford-Burnham Medical Research Institute in San Diego, USA, is published online today in the journal Nature. The results reveal that a ‘DNA shuffling’ event places the genes growth factor independent 1 transcription repressor (GFI1) or growth factor independent 1b transcription repressor (GFI1b) in proximity with enhancer elements that dramatically increase their expression.

Group 3 medulloblastoma is the most common paediatric brain tumour and has a higher rate of metastasis and a poorer prognosis than other types of this tumour. It has different subtypes and currently available treatments only cure a subset of patients and are associated with significant morbidity in the long-term. Therefore, increased insight into the mechanisms of this disease are vital in moving towards new therapies. Up until now, only the oncogene MYC had been firmly established as playing an important part in Group 3 medulloblastoma but this couldn’t explain many aspects of the disease. In the current study, the research team endeavoured to identify other genes involved. To do this they exploited the large known number of medulloblastoma sequences.

The team took a different approach to that usually used in identifying genetic changes in solid tumours. Instead of looking at individual gene changes, they concentrated on large-scale rearrangements in the areas between the genes. DNA from different patients was revealed to harbour a multitude of changes, among them inversions, deletions and duplications and importantly complex ‘DNA shuffling’ events. These events had one outcome in common; they placed GFI1b in close proximity to gene enhancer elements which are drivers of gene transcription, so that the expression of the GFI1b gene was now switched on in situations and cells where it would normally be switched off. While GFI1b was not affected in all patients, in many where it wasn’t a related gene called GFI1, which is on a different chromosome, was similarly shuffled so that it was in proximity to an enhancer. The research team suggest that it is these shuffling events that drive formation of the tumours. Study first author Dr Paul Northcott commented: “Nobody has seen such a process in solid cancers before…although it shares similarities with a phenomenon implicated in leukaemias, which has been known since the 80s.”

To further elucidate the role of GFI1b and GFI in medulloblastoma, the team engineered neural stem cells to express either GFI1b or GFI1 along with MYC and introduced these stem cells into the brains of healthy mice. These mice went on to develop aggressive, metastatic brain tumours very similar to human Group 3 medulloblastoma. These mice represent a genetic model for Group 3 medulloblastoma that can now be used to test potential therapies based on the study findings. For example, an existing class of drugs called bromodomain inhibitors can be used to target enhancer elements. The study has also created a potential diagnostic tool as GPI1b and GPI1 are not normally expressed in the brain.

The mice studies also left a puzzle for the research team to solve. For tumours to develop, the mice had to have MYC switched on as well as activation of GFI1B or GFI1. However, the groups established a statistical association between GFI1 and MYC but not between GFI1b and MYC. Further studies are addressing this puzzle. Senior author Dr Jan Korbel concluded: “What we’re learning from this study is that clearly one has to think outside the box when trying to understand cancer genomes.”

Sources

Northcott, P.A., Lee, C., Zichner, T. et al. Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma. Published online in Nature on 22 June 2014. DOI: 10.1038/nature13379.

Press release: European Molecular Biology Laboratory; available from http://www.embl.de/aboutus/communication...eidelberg/ [Accessed 23 June 2014]

Could triglyceride metabolic pathway gene hold key to heart attack reduction?

$
0
0
Could the Isis Pharmaceuticals trial drug ISIS-APOCIIIRx, which is currently in Phase 2 trials for the rare disease familial chylomicronemia syndrome (FCS), have wider implications for reduction of heart disease risk? The results of two new studies in the New England Journal of Medicine, from research groups in the USA and in Denmark, suggests that this may be the case.

ISIS-APOCIIIRx targets the APOC3 protein, a key mediator in triglyceride metabolism. Triglycerides are elevated to dangerously high levels in FCS. Until now, there has been controversy about whether triglycerides, which tend to be elevated in in people with heart attacks, were a causative agent or simply associated with other risk-associated factors. The doubt was increased when trials of drugs that caused a small reduction in triglycerides failed to have any effect on heart attack rates. However, the two recent studies appear to have ended the speculation as they point to a number of mutations in the APOC3-encoding gene which are associated with both an approximately 40% reduced level of triglycerides and a 40% reduction in heart attack risk. The results of the two independent studies were “eerily consistent”, according to the senior author on the American paper, Dr. Sekar Kathiresan of Massachusetts General Hospital and the Broad Institute.

A previous smaller study from the University of Maryland in 2008 on Amish people had shown that one in twenty Amish carried a mutation in APOC3 compared to one in 150 in the general American population and had substantially reduced triglyceride levels. The data, while interesting, were difficult to extrapolate to determine any impact on heart disease risk due to both the need to follow people over a substantial time period and also cultural reasons such as the tendency for Amis people to attend hospital less frequently than the general population, making cause of death more difficult generally to establish. The new studies were much larger, with the American study from researchers at the Broad Institute of Harvard and M.I.T mapping genes from 3734 Americans and the Danish study from researchers in Copenhagen University Hospital, using data from 75,725 people to investigate whether low triglyceride levels associated with reduced heart attack risk. In both studies APOC3 stood out as mutations in the gene encoding it was associated with both reduced triglycerides and reduced heart attack risk of between 36% to 40%.

The findings of these studies point the way to the development of new drugs for heart attack reduction for the first time essentially since the development of LDL-cholesterol targeting statins in the 1980s. This is where the Isis Pharmaceuticals ISIS-APOCIIIRx may come in. While the drug is currently in Phase 2 trials for FCS, and is targeted at APOC3, the company is keeping its options open regarding a wider indication in heart disease. However, the kind of huge, long-lasting study that would be needed would be beyond the scope of a small company like Isis and would require the resources of a larger company. Isis CEO Stanley Cooke said to Bloomberg"We're weighing how we want to take full advantage of this breakthrough, and as we do that we have to consider the potential broader development of the follow on product…We have a great deal of licensing interest for this drug." However, some industry analysts suggest that the potential of this drug and the underperformance of some other Isis products leaves them vulnerable to a hostile takeover. Whatever the outcome, t
he results of these important new studies raise hope of a new strategy to tackle the risk of heart disease.

Sources

The TG and HDL Working Group of the Exome Sequencing Project, National Heart, Lung, and Blood Institute. Loss-of-Function Mutations in APOC3, Triglycerides, and Coronary Disease. N Engl J Med (18 June 2014), doi:10.1056/nejmoa1307095

Jørgensen, A. B., R. Frikke-Schmidt, B. G. Nordestgaard, and A. Tybjærg-Hansen. N Engl J Med (18 June 2014), doi:10.1056/nejmoa1308027

Kolata, G. In Single Gene, a Path to Fight Heart Attacks. New York Times (18 June 2014), available from http://www.nytimes.com/2014/06/19/health...t_now&_r=1

http://www.fiercebiotech.com/story/isis-...2014-06-20
Viewing all 2695 articles
Browse latest View live




Latest Images