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PERL Program - BINC 2015 question

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Question :
i) An autocatalytic reaction is described by the expression
x/P = [exp(at) -1]/ [1 + b exp(at)], with a= ( A +P)k and b = P/A.
Write a program in C or JAVA or Perl or PYTHON to calculate x/P for three values of t (t =1,2 and 3)
using a & b as given in the input file autocat.dat.
Report if the saturation is reached by printing a string, “The saturation is reached. The values
are” and then print the value of ( x/P, a, b and t) for the saturation point.
Otherwise, print the message “ The Saturation is not reached” . All your output, including
these messages is to be saved in a file called autocat.out.



Solution :


#!/usr/bin/perl -w
# BINC 2015 sample question paper 3 solution
use strict;
my ($line,@arraya,@arrayb,$xp,$t,$j);
my $i=0;
open (FILE, "autocat.dat.txt") or
die "Cannot open file \n\n" ;

while ($line = <FILE>)
{
if ($line =~ /^a/ )
{ next; } 
else

$arraya[$i] = (split (/\s+/, $line))[0];
$arrayb[$i] = (split (/\s+/, $line))[1];
$i++; 
}
}
close FILE;

$j=$i; 
print "The value of J=$j \n";
open (OUTPUT, ">autocat.out");
for ($t=1;$t<4;$t++)
{
for($i=0;$i<$j;$i++)
{
$xp = (exp($arraya[$i]*$t) -1) / (1 + ($arrayb[$i]*exp($arraya[$i]*$t))); 
print "When T=$t the value of XP=$xp \n";
if ($xp==100)

print "The saturation is reached. The values are : \nXP=$xp \na=$arraya[$i] \nb=$arrayb[$i] \nt=$t\n\n";
print OUTPUT "The saturation is reached. The values are : \nXP=$xp \na=$arraya[$i] \nb=$arrayb[$i] \nt=$t\n\n";
}
else

print "The Saturation is not reached \n\n";
print OUTPUT "The Saturation is not reached \n\n";
}

}
close OUTPUT;

.txt   autocat.dat.txt (Size: 110 bytes / Downloads: 0)

PERL Program - BINC 2017 question

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Question:

Intra Molecular Distance Matrix calculation (50 marks) : ATOM lines (155) of a pdb file are provided in input file (only C@ residues). Calculate intra molecular distance between each C@ residue. If distance >= 6, print 1 in distance matrix of output file, else print 0 in distance matrix.


Solution:

#!/usr/bin/perl -w
# Perl program to calculate intra molecular distance
use strict;
my ($file,$line,@array_x,@array_y,@array_z,$dist,$j,$i,$element);
my $k=0;
print "Enter the PDB filename: ";
$file = <STDIN>;
chomp $file;
open (FILE, $file) or die "Cannot open file $file \n\n" ;

while ($line = <FILE>) 
{
if ($line =~ /^ATOM/)
{  
$array_x[$k] = (split (/\s+/, $line))[6];
$array_y[$k] = (split (/\s+/, $line))[7];
$array_z[$k] = (split (/\s+/, $line))[8];
$k++;
}
}
close FILE;
#print "K=$k \n";
#print "@array_x \n @array_y \n @array_z \n";
print "\n Intramolecular Distance Matrix is : \n\n";
print "ATOMi \t ATOMj \t Euclidean Distance \t Element \n";
for($i = 0; $i < $k ; $i++)
{
for($j = 0; $j < $k ; $j++)
{
#Euclidean Distance Calculation
$dist = sqrt(
                ($array_x[$i] - $array_x[$j])**2 +
                ($array_y[$i] - $array_y[$j])**2 +
                ($array_z[$i] - $array_z[$j])**2
            );
if ($dist >= 6)

$element = 1;
print "$i \t $j \t $dist \t $element \n"; 
}
else

$element = 0;
print "$i \t $j \t $dist \t $element \n"; 
}
}
}

Medical line

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Hello I'm currently a 2nd year student of biotechnology b.Tech, and I want to know what it entails for me to do my masters in a medical inclined course and also the types of medical courses available.

Path after 10th

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Hi Sunil
 
My son just gave Class 10th CBSE Exam and has opted for PCB, He is adamant / firm on taking up Biotechnology and go in Pure research   Exclamation

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How he should prepare for next 2 years?
Does he Opt for BSC or still he can pursue B Tech
 
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Chemistry

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Hi everyone!
I'm new here, and i hope it's okay to ask and discuss some questions like that [Image: smile.gif]
The question is simple, what do you think of this mechanism (constructed by me of course)? Is it good (link below is for google drive, JPG file, totally safe)
https://drive.google.com/file/d/0B0j65CD...sp=sharing

If you have any similar questions about chemistry, we can discuss them here.
Thank you for your attention!

Hi

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I am new in this group,
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Hello, I'm a CFA and run a research company, White Diamond Research. I would like to start a biotech company. I already have the investors who want to invest in a biotech, but we haven't settled on an idea yet. If you have a good drug idea, but not the funding, please let me know. I have an idea I've been working on, but still not sure if it would would be successful. It's a new indication for an existing antipsychotic drug. If you are knowledgeable about anti-psychotic drugs, feel free to contact me to discuss it. Send me an email at agefvert@whitediamondresearch.com.

Best,
Adam Gefvert, CFA

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Hi, everyone my name is bidyasagar pursuying my btech course,biotechnology last sem...i need some guideliness regarding the upcoming CEEB entrance exam..n which study materials(reference books) should i prefer for the same xm mentioned!!

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job

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I am a mechanical engineer presently servicing at a manufacturing industry. I have been planning for a tissue culture business farm from long back though I am not from the educational background required, but I love and have irresistible interest in the field from last 10 years.

In regard of business, i am planning for a partnership business in the field of both ground and underwater aquarium plants with starting of a smaller farm and later expansion to bigger farm with profit earned. I need some enlightenment in some specific areas that i am not aware of/ lacking of knowledge-
1. Domestic market feasibility at Bengal, demand and availability for ground plants, please mention the most demanding plants in the market that can be started with, please also mention the sales/marketing strategy that i need to adopt.
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Kindly advise. Any help regarding the matter would be appreciated.

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Hi friends I am doing 2 yr msc biotechnology I am interested in doing project work on stem cell technology can you please suggest some good institute for doing my project

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Hi here,
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Internships

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Hi everybody......im doin by second year b.tech biotech.....can i get info regarding internships this summer?

Job scope

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Hello, m doing bsc biotecnology .....so my question wat is the furtber scope fr job or further fr higher studies ,which should be better option .... wat r the criteria fr taking admission in a reputated colg after bsc or fr taking a job wid high paid salary ??

Btech Biotechnology colleges

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I am a 12th passout this year and i am a PCB student. I wanted to pursue btech biotechnology. Which are the best colleges?
Are there colleges that can provide a dual degree?
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