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Eye canal insights and importance for glaucoma

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New insights into a specialised eye structure called the Schlemm’s canal may be critical in advancing research on the blinding eye disease glaucoma, which affects over 70 million people globally. The insights are presented in a new study from a research team based in Jackson Laboratory and in Tufts University School of Medicine in Boston, published today in the journal PLoS Biology.

Schlemm’s canal, essentially a tube lined with endothelial cells, is vital for control of eye fluid flow and of intraocular pressure. It is directly implicated in glaucoma. However, its role is poorly understood. In the current study, the researchers used mouse models engineered to express fluorescent proteins and developed a ‘whole mount’, three-dimensional approach to the study of these animals. Using this novel methodology, they were able to observe how the Schlemm’s canal forms and both in regard to the eye and to adjacent tissues.

As a result of the study, the researchers identified a unique vascular development process they called ‘canalogenesis’ which combines elements of angiogenesis, vasculogenesis and lymphangiogenesis but also novel features that distinguishes it from all of them. They also identified a vascular endothelial growth factor receptor, a receptor tyrosine kinase called kinase insert domain receptor, as functionally important in early Schlemm’s canal development.

Another important finding was that the endothelial cells (SECs) lining the Schlemm’s canal were shown to have properties of blood and lymphatic endothelial cells. First author Dr Krishnakumar Kizhatil, an associate research scientist in the laboratory of JAX Professor and Howard Hughes Medical Investigator Dr Simon John explains the significance of this finding “Thus, Schlemm’s canal is a unique vessel with endothelial cells that are highly specialized for its complex functions…This resolves a long-standing controversy about the cellular phenotype of SECs.”

Co-author Dr Jeffrey Marchant of Tufts concludes: “This study lays a critical new foundation for determining the functions of Schlemm’s canal both in maintaining ocular health and when things go wrong in glaucoma.”

News source: PLOS Biology

News reference: Kizhatil K, Ryan M, Marchant JK, Henrich S, John SWM (2014) Schlemm’s Canal Is a Unique Vessel with a Combination of Blood Vascular and Lymphatic Phenotypes that Forms by a Novel Developmental Process. PLoS Biol 12(7): e1001912. doi:10.1371/journal.pbio.1001912; available at: http://www.plosbiology.org/article/info:...io.1001912

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R&D staff cuts likely as Allergan fights Valeant hostile takeover

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As Allergan attempts to evade a hostile takeover attempt value at $53 billion from Canadian company Valeant, Fierce Biotech reports that its R&D division is likely to be hard hit. This is despite optimism at the beginning of the year from CEO David Pyott that the R&D wing would be further enhanced in the company. The newly announced Allergan plans include letting 1500 workers go and removing 250 vacant positions. In this way Allergan claims it can reduce its 2015 budget by $475 million. While all elements of the company would be affected by such major cost-cutting, including commercial, general, administrative and manufacturing staff, R&D is likely to be particularly impacted. Emphasis would be in maintenance of ‘customer-facing’ staff and protection of current key development programmes rather than in new discoveries.

Valeant has a reputation for taking over drug companies, as with Medicis in 2012, and then laying off R&D staff and severely cutting ongoing development projects. While Valeant attempts to raise the resources for a 25% stake in Allergan, David Pyott has been emphasising that Allergan are themselves looking to make new acquisitions, indicating that they would be most interested in companies with a profile that is “specialist in nature" and a with new therapeutic "pillar" that could be used in new product development. However, Allergan has suffered the loss of one of its major investors, Capital Research & Management, and has also faced the blow of a third time rejection of its migraine drug Semprana by the US Food and Drug Administration (FDA).

The announced proposed cutbacks from Allergan may make the acquisition more difficult for Valeant to effect. Sterne Agee analyst Shibani Malhotra noted: “Today's announcement by Allergan makes it more difficult for Valeant to demonstrate how a merger can add incremental value and AGN shareholders may now require Valeant to pay a greater premium for Allergan, we believe."

Sources

Fierce Biotech: http://www.fiercebiotech.com/story/aller...2014-07-21 [Accessed 22 July 2014]

Fierce Biotech: http://www.fiercebiotech.com/story/hosti...2014-06-11 [Accessed 22 July 2014]

Eye canal insights and importance for glaucoma

$
0
0
New insights into a specialised eye structure called the Schlemm’s canal may be critical in advancing research on the blinding eye disease glaucoma, which affects over 70 million people globally. The insights are presented in a new study from a research team based in Jackson Laboratory and in Tufts University School of Medicine in Boston, published today in the journal PLoS Biology.

Schlemm’s canal, essentially a tube lined with endothelial cells, is vital for control of eye fluid flow and of intraocular pressure. It is directly implicated in glaucoma. However, its role is poorly understood. In the current study, the researchers used mouse models engineered to express fluorescent proteins and developed a ‘whole mount’, three-dimensional approach to the study of these animals. Using this novel methodology, they were able to observe how the Schlemm’s canal forms and both in regard to the eye and to adjacent tissues.

As a result of the study, the researchers identified a unique vascular development process they called ‘canalogenesis’ which combines elements of angiogenesis, vasculogenesis and lymphangiogenesis but also novel features that distinguishes it from all of them. They also identified a vascular endothelial growth factor receptor, a receptor tyrosine kinase called kinase insert domain receptor, as functionally important in early Schlemm’s canal development.

Another important finding was that the endothelial cells (SECs) lining the Schlemm’s canal were shown to have properties of blood and lymphatic endothelial cells. First author Dr Krishnakumar Kizhatil, an associate research scientist in the laboratory of JAX Professor and Howard Hughes Medical Investigator Dr Simon John explains the significance of this finding “Thus, Schlemm’s canal is a unique vessel with endothelial cells that are highly specialized for its complex functions…This resolves a long-standing controversy about the cellular phenotype of SECs.”

Co-author Dr Jeffrey Marchant of Tufts concludes: “This study lays a critical new foundation for determining the functions of Schlemm’s canal both in maintaining ocular health and when things go wrong in glaucoma.”

News source: PLOS Biology

News reference: Kizhatil K, Ryan M, Marchant JK, Henrich S, John SWM (2014) Schlemm’s Canal Is a Unique Vessel with a Combination of Blood Vascular and Lymphatic Phenotypes that Forms by a Novel Developmental Process. PLoS Biol 12(7): e1001912. doi:10.1371/journal.pbio.1001912; available at: http://www.plosbiology.org/article/info:...io.1001912

Enrollment in genetics undergraduate degree

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Hi all!

I'm a freshman currently enrolled at a university, and am pursuing a genetics major. Problem is, I would like to pursue genetic engineering as a career - will I be able to go to graduate school, studying genetic engineering, with my current genetics degree?

The research I have done online suggests that I should take a biomedical engineering undergraduate course, instead of a genetics course. What would be the best solution to this?

Please give me your thoughts and opinions on this, thank you!

DNA BARCODING

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1.0 DNA BAR CODING

1.1 INTRODUCTION.
DNA barcode is a unique pattern of DNA sequence that identifies each living thing using short DNA barcodes about 700 nucleotides or more in length, can be quickly processed from thousands of specimens and then analyzed by computer programs.

It’s a type of taxonomic method that uses a short genetic marker in an organism’s DNA to identify it as belonging to a particular species. It came first to the attention of the scientific community in 2003 when a group of scientific researchers of the university of Guelph published a paper titled “Biological identification through DNA barcodes”. In it, they proposed a new system of species identification and discovery using a short section of DNA from a standardized region of the genome. The gene region that is being used for almost all animals is 648 base-pair region of the mitochondrial cytochrome c oxidase subunit I gene (COI), which is proving highly effective in identifying birds, butterflies, fish, flies and many other animal groups.

The choice of taking the mitochondrial gene region COI is because all eukaryote cells contain mitochondrial containing mitochondrial DNA (mtDNA) which it maternally inherited and has a high mutating rate which results in significant variation in mtDNA sequences between species and brings a small variation in animals. A 648-bp region ( the folmer region) of the mitochondrial cytochrome c oxidase subunit I, was proposed as a potential barcode.

1.2 USE OF DNA BARCODES.
The major use of DNA barcode is classifying different animal species at a molecular level, use of molecular biology techniques such as PCR and Gene sequencing to identify and classify organisms based on short sequences of their genes that are specific and unique only to that specific species.

1.3 DNA BARCODE FORMATION, IDENTIFICATION AND STORAGE.
DNA barcodes are created following a number of steps starting from obtaining cell samples from a certain animal species, perform DNA extraction, run polymerase chain reaction (PCR) so as to amplify a certain region of interest of the DNA then run DNA sequencing so as to identify the region. The DNA region can be compared with a control sequence in a data base so as to identify the particular species or to update the data base with the new DNA sequence of a new species.

A standardized library of barcodes will enable more people i.e experts and non-experts to identify species whether abundant or in a rare case, with recent development of technology DNA barcode are preserved in large data bases such as the Barcode of life Data Systems (BOLD) at the university of Guelph, Canada. Today more over 290,000 records have been banked, representing over 31,000 species and data accumulate at an accelerating rate, this gives easy access to scientists and non-scientists all over the world to update and process different DNA sequences of different species.

1.4 SIGNIFICANCES OF DNA BARCODE.
Identifying organisms has grown in importance as we monitor the biological effects of global climate change and attempt preserve species diversity in the face of accelerating habitat destruction. Now DNA barcodes allow non-experts to objectively identify species even from small, damaged, or industrially processed materials, as the unique pattern of bars in a universal product code (UPC). This helps in preserving them, monitoring their development and stopping them from getting extinct.

Particular in forensic sciences on the part of the crime laboratory investigation, DNA barcode acts as not only the new technology of identifying specific species but the key to solving criminal cases involving poaching of different animals but mostly the endangered ones and the wildlife industry in general, by linking the victims (animals) and suspects makes it easier for the prosecutor to solve these cases. This system has helped a lot in developed countries in solving cases but it has being a problem in developed countries due to the lack of appropriate technology and poor storage of DNA barcodes of the species.

HELP: MASTER'S DEGREE

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Hello everyone, I am writing on the forum hoping for help: I'm studying Biotechnology in Italy and I have to start the third year; Unfortunately, little by little I'm starting to think that biotechnology is not the best choice for me and for my life, mainly because I realized that i couldn't stay in a laboratory; However, before leaving biotechnology i would like to know if there were in Europe a Master's degree not related to biotechnology, in which, however, I could access.

Sincerely i'm interested in cultures, society and antropology (I know that it is little related to biotechnology), but also for example the ecology ..

I'm looking at the various magisterial in Italy and in Europe hoping there is some Master's degree in which I can access that combines what i'm studying to my interests.

If someone had experienced some similar experience I would be grateful if could put it here, so we compare the opinions (and maybe find an alternative route without "throwing" the two years of study)

Thanks in advance

Samuel

Training Programme at IIT Delhi

Can electrical frequencies kill most diseases?

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As I understand, certain frequencies can help destroy bacteria, pathogens, viruses as well as HIV and AIDS. In therapeutic means, this would be possible using ultrasound or red light as well since it is a photodynamic way to kill bacteria as well.

Our bodies as I learned is able to produce around 10 to 100 millivolts (Nanomedicine). If this is the case, why not use electricity to cure illnesses through frequencies lower than the bodies voltage/current level to cure all illnesses? Using electricity seems like a better alternative to ultrasound or red light. Our bodies can handle electricity, since we produce them anyways. It just sounds logical that using electricity to cure illness, by nature, fits the description of a good adaptation to the body, but in very low voltages.

This does bring to mind about blood electrification. Does this work, or does it not? Just passing blood cells, along with those bacteria, pathogens, viruses that travel along with them through an electric frequency field in VERY low voltages should help keep blood cells plump and healthy and destroy illnesses around them. What do you guys think about this?

I know there are still further studies being made for this subject, but it sounds just right that Electrocurrent should do the trick for any illnesses out there, and might be good for the future.

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Masters In biotech

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Hello. Im currently in the 3rd year of my BSc. Biotech degree and would like to know the suitable countries to pursue my masters. USA is not possible since it requires 16 years, however is it a good idea to complete a year of my masters in India and then transfer?
Also,i would like to know the current industries in Biotech that are doing well and the country i decide to study should be such where i could get a job as well?

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DNA BARCODING

$
0
0
1.0 DNA BAR CODING

1.1 INTRODUCTION.
DNA barcode is a unique pattern of DNA sequence that identifies each living thing using short DNA barcodes about 700 nucleotides or more in length, can be quickly processed from thousands of specimens and then analyzed by computer programs.

It’s a type of taxonomic method that uses a short genetic marker in an organism’s DNA to identify it as belonging to a particular species. It came first to the attention of the scientific community in 2003 when a group of scientific researchers of the university of Guelph published a paper titled “Biological identification through DNA barcodes”. In it, they proposed a new system of species identification and discovery using a short section of DNA from a standardized region of the genome. The gene region that is being used for almost all animals is 648 base-pair region of the mitochondrial cytochrome c oxidase subunit I gene (COI), which is proving highly effective in identifying birds, butterflies, fish, flies and many other animal groups.

The choice of taking the mitochondrial gene region COI is because all eukaryote cells contain mitochondrial containing mitochondrial DNA (mtDNA) which it maternally inherited and has a high mutating rate which results in significant variation in mtDNA sequences between species and brings a small variation in animals. A 648-bp region ( the folmer region) of the mitochondrial cytochrome c oxidase subunit I, was proposed as a potential barcode.

1.2 USE OF DNA BARCODES.
The major use of DNA barcode is classifying different animal species at a molecular level, use of molecular biology techniques such as PCR and Gene sequencing to identify and classify organisms based on short sequences of their genes that are specific and unique only to that specific species.

1.3 DNA BARCODE FORMATION, IDENTIFICATION AND STORAGE.
DNA barcodes are created following a number of steps starting from obtaining cell samples from a certain animal species, perform DNA extraction, run polymerase chain reaction (PCR) so as to amplify a certain region of interest of the DNA then run DNA sequencing so as to identify the region. The DNA region can be compared with a control sequence in a data base so as to identify the particular species or to update the data base with the new DNA sequence of a new species.

A standardized library of barcodes will enable more people i.e experts and non-experts to identify species whether abundant or in a rare case, with recent development of technology DNA barcode are preserved in large data bases such as the Barcode of life Data Systems (BOLD) at the university of Guelph, Canada. Today more over 290,000 records have been banked, representing over 31,000 species and data accumulate at an accelerating rate, this gives easy access to scientists and non-scientists all over the world to update and process different DNA sequences of different species.

1.4 SIGNIFICANCES OF DNA BARCODE.
Identifying organisms has grown in importance as we monitor the biological effects of global climate change and attempt preserve species diversity in the face of accelerating habitat destruction. Now DNA barcodes allow non-experts to objectively identify species even from small, damaged, or industrially processed materials, as the unique pattern of bars in a universal product code (UPC). This helps in preserving them, monitoring their development and stopping them from getting extinct.

Particular in forensic sciences on the part of the crime laboratory investigation, DNA barcode acts as not only the new technology of identifying specific species but the key to solving criminal cases involving poaching of different animals but mostly the endangered ones and the wildlife industry in general, by linking the victims (animals) and suspects makes it easier for the prosecutor to solve these cases. This system has helped a lot in developed countries in solving cases but it has being a problem in developed countries due to the lack of appropriate technology and poor storage of DNA barcodes of the species.

The Pipette... On paper

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Have a modest background in molecular biology from years past. Found a small nonprofit biotech lab with others similarly educated. I write to inquire if one can calculate the micropipette dial settings on paper before going to lab.

Wanted a way to use the desired volume and the micropipette size to confirm what the dial settings would show. Errors are infrequent here but can cost valuable time.

Even the experienced can be distracted. Guidance sought
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